Evolution by duplication: paleopolyploidy events in plants reconstructed by deciphering the evolutionary history of VOZ transcription factors.
Identifieur interne : 000F13 ( Main/Exploration ); précédent : 000F12; suivant : 000F14Evolution by duplication: paleopolyploidy events in plants reconstructed by deciphering the evolutionary history of VOZ transcription factors.
Auteurs : Bei Gao [République populaire de Chine] ; Moxian Chen [République populaire de Chine] ; Xiaoshuang Li [République populaire de Chine] ; Yuqing Liang [République populaire de Chine] ; Fuyuan Zhu [République populaire de Chine] ; Tieyuan Liu [République populaire de Chine] ; Daoyuan Zhang [République populaire de Chine] ; Andrew J. Wood [États-Unis] ; Melvin J. Oliver [États-Unis] ; Jianhua Zhang [République populaire de Chine]Source :
- BMC plant biology [ 1471-2229 ] ; 2018.
Descripteurs français
- KwdFr :
- Duplication de gène (MeSH), Facteurs de transcription (classification), Facteurs de transcription (génétique), Génome végétal (MeSH), Phylogenèse (MeSH), Polyploïdie (MeSH), Protéines végétales (classification), Protéines végétales (génétique), Solanaceae (génétique), Spécificité d'espèce (MeSH), Évolution moléculaire (MeSH).
- MESH :
- classification : Facteurs de transcription, Protéines végétales.
- génétique : Facteurs de transcription, Protéines végétales, Solanaceae.
- Duplication de gène, Génome végétal, Phylogenèse, Polyploïdie, Spécificité d'espèce, Évolution moléculaire.
English descriptors
- KwdEn :
- MESH :
- chemical , classification : Plant Proteins, Transcription Factors.
- chemical , genetics : Plant Proteins, Transcription Factors.
- genetics : Solanaceae.
- Evolution, Molecular, Gene Duplication, Genome, Plant, Phylogeny, Polyploidy, Species Specificity.
Abstract
BACKGROUND
Facilitated by the rapid progress of sequencing technology, comparative genomic studies in plants have unveiled recurrent whole genome duplication (i.e. polyploidization) events throughout plant evolution. The evolutionary past of plant genes should be analyzed in a background of recurrent polyploidy events in distinctive plant lineages. The Vascular Plant One Zinc-finger (VOZ) gene family encode transcription factors associated with a number of important traits including control of flowering time and photoperiodic pathways, but the evolutionary trajectory of this gene family remains uncharacterized.
RESULTS
In this study, we deciphered the evolutionary history of the VOZ gene family by analyses of 107 VOZ genes in 46 plant genomes using integrated methods: phylogenic reconstruction, Ks-based age estimation and genomic synteny comparisons. By scrutinizing the VOZ gene family phylogeny the core eudicot γ event was well circumscribed, and relics of the precommelinid τ duplication event were detected by incorporating genes from oil palm and banana. The more recent T and ρ polyploidy events, closely coincident with the species diversification in Solanaceae and Poaceae, respectively, were also identified. Other important polyploidy events captured included the "salicoid" event in poplar and willow, the "early legume" and "soybean specific" events in soybean, as well as the recent polyploidy event in Physcomitrella patens. Although a small transcription factor gene family, the evolutionary history of VOZ genes provided an outstanding record of polyploidy events in plants. The evolutionary past of VOZ gene family demonstrated a close correlation with critical plant polyploidy events which generated species diversification and provided answer to Darwin's "abominable mystery".
CONCLUSIONS
We deciphered the evolutionary history of VOZ transcription factor family in plants and ancestral polyploidy events in plants were recapitulated simultaneously. This analysis allowed for the generation of an idealized plant gene tree demonstrating distinctive retention and fractionation patterns following polyploidy events.
DOI: 10.1186/s12870-018-1437-8
PubMed: 30367626
PubMed Central: PMC6204039
Affiliations:
- République populaire de Chine, États-Unis
- Guangdong
- Sha Tin, Shenzhen
- Université chinoise de Hong Kong
Links toward previous steps (curation, corpus...)
Le document en format XML
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Wood</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Biology, Southern Illinois University-Carbondale, Carbondale, IL, 62901-6509, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Biology, Southern Illinois University-Carbondale, Carbondale, IL, 62901-6509</wicri:regionArea><wicri:noRegion>62901-6509</wicri:noRegion></affiliation></author><author><name sortKey="Oliver, Melvin J" sort="Oliver, Melvin J" uniqKey="Oliver M" first="Melvin J" last="Oliver">Melvin J. Oliver</name><affiliation wicri:level="1"><nlm:affiliation>USDA-ARS, Plant Genetic Research Unit, University of Missouri, Columbia, MO, 65211, USA. Mel.Oliver@ars.usda.gov.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>USDA-ARS, Plant Genetic Research Unit, University of Missouri, Columbia, MO, 65211</wicri:regionArea><wicri:noRegion>65211</wicri:noRegion></affiliation></author><author><name sortKey="Zhang, Jianhua" sort="Zhang, Jianhua" uniqKey="Zhang J" first="Jianhua" last="Zhang">Jianhua Zhang</name><affiliation wicri:level="4"><nlm:affiliation>School of Life Sciences and the State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China. jzhang@hkbu.edu.hk.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Life Sciences and the State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong</wicri:regionArea><orgName type="university">Université chinoise de Hong Kong</orgName><placeName><settlement type="city">Sha Tin</settlement></placeName></affiliation><affiliation 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Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Life Sciences and the State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong</wicri:regionArea><orgName type="university">Université chinoise de Hong Kong</orgName><placeName><settlement type="city">Sha Tin</settlement></placeName></affiliation></author><author><name sortKey="Chen, Moxian" sort="Chen, Moxian" uniqKey="Chen M" first="Moxian" last="Chen">Moxian Chen</name><affiliation wicri:level="4"><nlm:affiliation>Shenzhen Research Institute, The Chinese University of Hong Kong, Shenzhen, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Shenzhen Research Institute, The Chinese University of Hong Kong, Shenzhen</wicri:regionArea><placeName><settlement type="city">Shenzhen</settlement><region type="province">Guangdong</region></placeName><orgName type="university">Université chinoise de Hong Kong</orgName></affiliation></author><author><name sortKey="Li, Xiaoshuang" sort="Li, Xiaoshuang" uniqKey="Li X" first="Xiaoshuang" last="Li">Xiaoshuang Li</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Biogeography and Bioresources, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Biogeography and Bioresources, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011</wicri:regionArea><wicri:noRegion>830011</wicri:noRegion></affiliation></author><author><name sortKey="Liang, Yuqing" sort="Liang, Yuqing" uniqKey="Liang Y" first="Yuqing" last="Liang">Yuqing Liang</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Biogeography and Bioresources, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Biogeography and Bioresources, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011</wicri:regionArea><wicri:noRegion>830011</wicri:noRegion></affiliation></author><author><name sortKey="Zhu, Fuyuan" sort="Zhu, Fuyuan" uniqKey="Zhu F" first="Fuyuan" last="Zhu">Fuyuan Zhu</name><affiliation wicri:level="1"><nlm:affiliation>College of Biology and the Environment, Nanjing Forestry University, Nanjing, Jiangsu Province, 210037, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Biology and the Environment, Nanjing Forestry University, Nanjing, Jiangsu Province, 210037</wicri:regionArea><wicri:noRegion>210037</wicri:noRegion></affiliation></author><author><name sortKey="Liu, Tieyuan" sort="Liu, Tieyuan" uniqKey="Liu T" first="Tieyuan" last="Liu">Tieyuan Liu</name><affiliation wicri:level="4"><nlm:affiliation>School of Life Sciences and the State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Life Sciences and the State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong</wicri:regionArea><orgName type="university">Université chinoise de Hong Kong</orgName><placeName><settlement type="city">Sha Tin</settlement></placeName></affiliation></author><author><name sortKey="Zhang, Daoyuan" sort="Zhang, Daoyuan" uniqKey="Zhang D" first="Daoyuan" last="Zhang">Daoyuan Zhang</name><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Biogeography and Bioresources, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Biogeography and Bioresources, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011</wicri:regionArea><wicri:noRegion>830011</wicri:noRegion></affiliation></author><author><name sortKey="Wood, Andrew J" sort="Wood, Andrew J" uniqKey="Wood A" first="Andrew J" last="Wood">Andrew J. Wood</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Biology, Southern Illinois University-Carbondale, Carbondale, IL, 62901-6509, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Biology, Southern Illinois University-Carbondale, Carbondale, IL, 62901-6509</wicri:regionArea><wicri:noRegion>62901-6509</wicri:noRegion></affiliation></author><author><name sortKey="Oliver, Melvin J" sort="Oliver, Melvin J" uniqKey="Oliver M" first="Melvin J" last="Oliver">Melvin J. Oliver</name><affiliation wicri:level="1"><nlm:affiliation>USDA-ARS, Plant Genetic Research Unit, University of Missouri, Columbia, MO, 65211, USA. Mel.Oliver@ars.usda.gov.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>USDA-ARS, Plant Genetic Research Unit, University of Missouri, Columbia, MO, 65211</wicri:regionArea><wicri:noRegion>65211</wicri:noRegion></affiliation></author><author><name sortKey="Zhang, Jianhua" sort="Zhang, Jianhua" uniqKey="Zhang J" first="Jianhua" last="Zhang">Jianhua Zhang</name><affiliation wicri:level="4"><nlm:affiliation>School of Life Sciences and the State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China. jzhang@hkbu.edu.hk.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Life Sciences and the State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong</wicri:regionArea><orgName type="university">Université chinoise de Hong Kong</orgName><placeName><settlement type="city">Sha Tin</settlement></placeName></affiliation><affiliation wicri:level="4"><nlm:affiliation>Shenzhen Research Institute, The Chinese University of Hong Kong, Shenzhen, China. jzhang@hkbu.edu.hk.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Shenzhen Research Institute, The Chinese University of Hong Kong, Shenzhen</wicri:regionArea><placeName><settlement type="city">Shenzhen</settlement><region type="province">Guangdong</region></placeName><orgName type="university">Université chinoise de Hong Kong</orgName></affiliation><affiliation wicri:level="1"><nlm:affiliation>Department of Biology, Faculty of Science, Hong Kong Baptist University, Hong Kong, China. jzhang@hkbu.edu.hk.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Department of Biology, Faculty of Science, Hong Kong Baptist University, Hong Kong</wicri:regionArea><wicri:noRegion>Hong Kong</wicri:noRegion></affiliation></author></analytic><series><title level="j">BMC plant biology</title><idno type="eISSN">1471-2229</idno><imprint><date when="2018" type="published">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Evolution, Molecular (MeSH)</term><term>Gene Duplication (MeSH)</term><term>Genome, Plant (MeSH)</term><term>Phylogeny (MeSH)</term><term>Plant Proteins (classification)</term><term>Plant Proteins (genetics)</term><term>Polyploidy (MeSH)</term><term>Solanaceae (genetics)</term><term>Species Specificity (MeSH)</term><term>Transcription Factors (classification)</term><term>Transcription Factors (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Duplication de gène (MeSH)</term><term>Facteurs de transcription (classification)</term><term>Facteurs de transcription (génétique)</term><term>Génome végétal (MeSH)</term><term>Phylogenèse (MeSH)</term><term>Polyploïdie (MeSH)</term><term>Protéines végétales (classification)</term><term>Protéines végétales (génétique)</term><term>Solanaceae (génétique)</term><term>Spécificité d'espèce (MeSH)</term><term>Évolution moléculaire (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="classification" xml:lang="en"><term>Plant Proteins</term><term>Transcription Factors</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Plant Proteins</term><term>Transcription Factors</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="fr"><term>Facteurs de transcription</term><term>Protéines végétales</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Solanaceae</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Facteurs de transcription</term><term>Protéines végétales</term><term>Solanaceae</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Evolution, Molecular</term><term>Gene Duplication</term><term>Genome, Plant</term><term>Phylogeny</term><term>Polyploidy</term><term>Species Specificity</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Duplication de gène</term><term>Génome végétal</term><term>Phylogenèse</term><term>Polyploïdie</term><term>Spécificité d'espèce</term><term>Évolution moléculaire</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b></p><p>Facilitated by the rapid progress of sequencing technology, comparative genomic studies in plants have unveiled recurrent whole genome duplication (i.e. polyploidization) events throughout plant evolution. The evolutionary past of plant genes should be analyzed in a background of recurrent polyploidy events in distinctive plant lineages. The Vascular Plant One Zinc-finger (VOZ) gene family encode transcription factors associated with a number of important traits including control of flowering time and photoperiodic pathways, but the evolutionary trajectory of this gene family remains uncharacterized.</p></div><div type="abstract" xml:lang="en"><p><b>RESULTS</b></p><p>In this study, we deciphered the evolutionary history of the VOZ gene family by analyses of 107 VOZ genes in 46 plant genomes using integrated methods: phylogenic reconstruction, Ks-based age estimation and genomic synteny comparisons. By scrutinizing the VOZ gene family phylogeny the core eudicot γ event was well circumscribed, and relics of the precommelinid τ duplication event were detected by incorporating genes from oil palm and banana. The more recent T and ρ polyploidy events, closely coincident with the species diversification in Solanaceae and Poaceae, respectively, were also identified. Other important polyploidy events captured included the "salicoid" event in poplar and willow, the "early legume" and "soybean specific" events in soybean, as well as the recent polyploidy event in Physcomitrella patens. Although a small transcription factor gene family, the evolutionary history of VOZ genes provided an outstanding record of polyploidy events in plants. The evolutionary past of VOZ gene family demonstrated a close correlation with critical plant polyploidy events which generated species diversification and provided answer to Darwin's "abominable mystery".</p></div><div type="abstract" xml:lang="en"><p><b>CONCLUSIONS</b></p><p>We deciphered the evolutionary history of VOZ transcription factor family in plants and ancestral polyploidy events in plants were recapitulated simultaneously. This analysis allowed for the generation of an idealized plant gene tree demonstrating distinctive retention and fractionation patterns following polyploidy events.</p></div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">30367626</PMID><DateCompleted><Year>2018</Year><Month>11</Month><Day>13</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>14</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2229</ISSN><JournalIssue CitedMedium="Internet"><Volume>18</Volume><Issue>1</Issue><PubDate><Year>2018</Year><Month>Oct</Month><Day>26</Day></PubDate></JournalIssue><Title>BMC plant biology</Title><ISOAbbreviation>BMC Plant Biol</ISOAbbreviation></Journal><ArticleTitle>Evolution by duplication: paleopolyploidy events in plants reconstructed by deciphering the evolutionary history of VOZ transcription factors.</ArticleTitle><Pagination><MedlinePgn>256</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/s12870-018-1437-8</ELocationID><Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Facilitated by the rapid progress of sequencing technology, comparative genomic studies in plants have unveiled recurrent whole genome duplication (i.e. polyploidization) events throughout plant evolution. The evolutionary past of plant genes should be analyzed in a background of recurrent polyploidy events in distinctive plant lineages. The Vascular Plant One Zinc-finger (VOZ) gene family encode transcription factors associated with a number of important traits including control of flowering time and photoperiodic pathways, but the evolutionary trajectory of this gene family remains uncharacterized.</AbstractText><AbstractText Label="RESULTS" NlmCategory="RESULTS">In this study, we deciphered the evolutionary history of the VOZ gene family by analyses of 107 VOZ genes in 46 plant genomes using integrated methods: phylogenic reconstruction, Ks-based age estimation and genomic synteny comparisons. By scrutinizing the VOZ gene family phylogeny the core eudicot γ event was well circumscribed, and relics of the precommelinid τ duplication event were detected by incorporating genes from oil palm and banana. The more recent T and ρ polyploidy events, closely coincident with the species diversification in Solanaceae and Poaceae, respectively, were also identified. Other important polyploidy events captured included the "salicoid" event in poplar and willow, the "early legume" and "soybean specific" events in soybean, as well as the recent polyploidy event in Physcomitrella patens. Although a small transcription factor gene family, the evolutionary history of VOZ genes provided an outstanding record of polyploidy events in plants. The evolutionary past of VOZ gene family demonstrated a close correlation with critical plant polyploidy events which generated species diversification and provided answer to Darwin's "abominable mystery".</AbstractText><AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">We deciphered the evolutionary history of VOZ transcription factor family in plants and ancestral polyploidy events in plants were recapitulated simultaneously. This analysis allowed for the generation of an idealized plant gene tree demonstrating distinctive retention and fractionation patterns following polyploidy events.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Gao</LastName><ForeName>Bei</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>School of Life Sciences and the State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chen</LastName><ForeName>Moxian</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Shenzhen Research Institute, The Chinese University of Hong Kong, Shenzhen, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Xiaoshuang</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>Key Laboratory of Biogeography and Bioresources, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Liang</LastName><ForeName>Yuqing</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Key Laboratory of Biogeography and Bioresources, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhu</LastName><ForeName>Fuyuan</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>College of Biology and the Environment, Nanjing Forestry University, Nanjing, Jiangsu Province, 210037, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Tieyuan</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>School of Life Sciences and the State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Daoyuan</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Key Laboratory of Biogeography and Bioresources, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wood</LastName><ForeName>Andrew J</ForeName><Initials>AJ</Initials><AffiliationInfo><Affiliation>Department of Plant Biology, Southern Illinois University-Carbondale, Carbondale, IL, 62901-6509, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Oliver</LastName><ForeName>Melvin J</ForeName><Initials>MJ</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-5991-5788</Identifier><AffiliationInfo><Affiliation>USDA-ARS, Plant Genetic Research Unit, University of Missouri, Columbia, MO, 65211, USA. Mel.Oliver@ars.usda.gov.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Jianhua</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>School of Life Sciences and the State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China. jzhang@hkbu.edu.hk.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Shenzhen Research Institute, The Chinese University of Hong Kong, Shenzhen, China. jzhang@hkbu.edu.hk.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Biology, Faculty of Science, Hong Kong Baptist University, Hong Kong, China. jzhang@hkbu.edu.hk.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>1638972</GrantID><Agency>Directorate for Biological Sciences</Agency><Country></Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2018</Year><Month>10</Month><Day>26</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>BMC Plant Biol</MedlineTA><NlmUniqueID>100967807</NlmUniqueID><ISSNLinking>1471-2229</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D014157">Transcription Factors</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D019143" MajorTopicYN="Y">Evolution, Molecular</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020440" MajorTopicYN="N">Gene Duplication</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018745" MajorTopicYN="Y">Genome, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D011123" MajorTopicYN="Y">Polyploidy</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D019657" MajorTopicYN="N">Solanaceae</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D013045" MajorTopicYN="N">Species Specificity</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014157" MajorTopicYN="N">Transcription Factors</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading></MeshHeadingList><KeywordList 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first="Andrew J" last="Wood">Andrew J. 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